rs16788506 SNP Detail

Summary

• ID
  rs16788506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAATC ACCCCGAGAC
  TGTCTGAAGG TTGTTTATAT CAAGTCCTTT TATTCTGATA CCACAGAAAT ACCTTGTCAC
  AGTACAGGGG AGGGACACTG AAGTACCACG AGTTCTCACA GAGCACAGGA GGACGGCACA
  CAATTCACAA GGTCATGTGG AGGACTCGGG TCATTGCACT TACAATGTAA ACTTGTTTGT
  Y
  TGACTTTGTA CAGCACTCTC CCCCCTCACA GAGAGAAGGA GAGAGAGGGG AGGAGGAGGG
  GAGGGAAAGC AAAAACAAGA CATAGAAGCT AGAGGGAGAA AATGTAGATG GCCACCACTC
  TCTAGGGTAC CACACTTGAG AGGAATTGAT TTGACCCCAG AGGCTGAATG AGACTCGTGC
  ACACACGCAC AAACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740718	apeh_AP55_15	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788506					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973397 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1661 bp upstream
Bsn	bassoon	within coordinates
Cpgi22322	CpG island 22322	950 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1476 bp downstream
Rr686707	regulatory region 686707	1902 bp distal
Rr686708	regulatory region 686708	1605 bp distal
Rr686709	regulatory region 686709	981 bp distal
Rr686710	regulatory region 686710	421 bp distal
Rr686711	regulatory region 686711	82 bp proximal
Rr686712	regulatory region 686712	304 bp proximal
Tssr87065	transcription start site region 87065	1502 bp downstream
Tssr87066	transcription start site region 87066	985 bp downstream
Tssr87067	transcription start site region 87067	947 bp downstream
Tssr91491	transcription start site region 91491	1711 bp upstream
Tssr91492	transcription start site region 91492	1656 bp upstream