rs16788520 SNP Detail

Summary

• ID
  rs16788520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107969640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAGAAG GGGCAAAGGC
  CATGTTGCTG CTGACCTGAC CAGGGGACAC ATTTTCAGGG ACGCCCTCAA GCACGGAGAT
  GTTACCACTC TCGATATCCA GCACGCAGAG CACAGGGATG CTTTTGGAAA CCATAGTTTC
  TCCCCAGTCT TCATAAAATA CAAACTGGTC CCCCTGAGAA CAGAGGACAC TCAATGCCCA
  R
  GGTGCCTACA GAACCCTGAC CTGCCTCCTA GACACTAGGG CCTCCCAGGT CCACCGGATG
  TAGGGCAGGG CTGCCCGGCA GGGCCTGTGT GGCCCGGCCA CACCACAAGC ACCTTGATGG
  CCTGGTCTGG CTTCTTCGGC CTGGCCATCT CCTCATCACT GGCACTGACG TCCAAGGCTT
  TGGTTTGAAA GAAGGACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740751	apeh_AP58_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788520					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107969640 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	1639 bp proximal
Rr401675	regulatory region 401675	1980 bp upstream
Rr686706	regulatory region 686706	1467 bp distal
Rr686707	regulatory region 686707	1834 bp proximal