rs16788522 SNP Detail

Summary

• ID
  rs16788522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107969809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT CTCCTCATCA CTGGCACTGA
  Y
  GTCCAAGGCT TTGGTTTGAA AGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ
ss24740753	apeh_AP59_1	ROCHEBIO	RPAMM	f	SNP	C		C	C			C			C	C	T	C	C
ss47779425	NES11990244	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	C		C	C						C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ
rs16788522					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47779425	NES11990244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107969809 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	1470 bp proximal
Rr401675	regulatory region 401675	1811 bp upstream
Rr686706	regulatory region 686706	1636 bp distal
Rr686707	regulatory region 686707	1665 bp proximal
Rr686708	regulatory region 686708	1962 bp proximal
Rr686709	regulatory region 686709	1986 bp proximal
Tssr91491	transcription start site region 91491	1849 bp downstream
Tssr91492	transcription start site region 91492	1917 bp downstream