rs16788523 SNP Detail

Summary

• ID
  rs16788523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAGGAC TCAGCTTTGG
  GACGCTTCTT CTCCGCCACA TACAACAAGT GCGTCTCTGA GTGTGACCAG GAGAGGCAGC
  CAAAGCAGTC TGCATGCAGG GAGGGACGGT TAGGGGGAGC CCAATGCTAT AGCTGCCCCT
  TCTGCCCACC CCTCCTGCTT ACCAGCCAGG CGCCTCACCA TCTTCATACA CAGGCCCATG
  Y
  TTCTCCAGTG CAGACAGGTT GAAACTCTTG AGCTTGCGGT TCTTCTCCCA GACCTGAAGA
  TACCTGGGCA TCAGGCTGCT TGCCCCTCCA CAGGGCTTCA CTTGTGGCAC TAAGTGACCG
  GCTGGCTGCC ACCTCATCCT TGCAAACTCA CCTCCAAGAA CTGTTTTTCC TCTCCCGAGA
  CTGCACCTCC AGCCTTGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BUB	C3H/HeJ	C57BL/6J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss24740754	apeh_AP59_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BUB	C3H/HeJ	C57BL/6J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs16788523					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970028 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	1251 bp proximal
Gm57046	predicted gene, 57046	1826 bp upstream
Rr401675	regulatory region 401675	1592 bp upstream
Rr686706	regulatory region 686706	1855 bp distal
Rr686707	regulatory region 686707	1446 bp proximal
Rr686708	regulatory region 686708	1743 bp proximal
Rr686709	regulatory region 686709	1767 bp proximal
Tssr87065	transcription start site region 87065	1828 bp upstream
Tssr91491	transcription start site region 91491	1630 bp downstream
Tssr91492	transcription start site region 91492	1698 bp downstream