rs16788524 SNP Detail

Summary

• ID
  rs16788524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACAAGCA CCTTGATGGC CTGGTCTGGC
  TTCTTCGGCC TGGCCATCNC CTCATCACTG GCACTGANGT CCAAGGCTTT GGTTTGAAAG
  AAGGACTCAG CTTTGGGACG CTTCTTCTCC GCCACATACA ACAAGTGCGT CTCTGAGTGT
  GACCAGGAGA GGCAGCCAAA GCAGTCTGCA TGCAGGGAGG GACGGTTAGG GGGAGCCCAA
  TGCTATAGCT GCCCCTTCTG CCCACCCCTC CTGCTTACCA GCCAGGTTAC AAGCACCTTG
  ATGGCCTGGT CTGGCTTCTT CGGCCTGGCC ATCNCCTCAT CACTGGCACT GANGTCCAAG
  GCTTTGGTTT GAAAGAAGGA CTCAGCTTTG GGACGCTTCT TCTCCGCCAC ATACAACAAG
  TGCGTCTCTG AGTGTGACCA GGAGAGGCAG CCAAAGCAGT CTGCATGCAG GGAGGGACGG
  TTAGGGGGAG CCCAATGCTA TAGCTGCCCC TTCTGCCCAC CCCTCCTGCT TACCAGCCAG
  GGGAGACTCT CTGCTCAGCA GCCTGAGAAC AGGGGTTGCA GGTCAGGAAG GTGCCAAGTC
  S
  NCCCCCCCAA CAGCCTTGTG CTGGCCCCCT TACTGGTCAC AACCTCTTAG           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	C3H/HeJ	C57BL/6J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss24740755	apeh_AP59_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	C3H/HeJ	C57BL/6J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs16788524					SNP	G	G	G	G	G	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970312 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	967 bp proximal
Gm57046	predicted gene, 57046	1542 bp upstream
Rr401675	regulatory region 401675	1308 bp upstream
Rr686707	regulatory region 686707	1162 bp proximal
Rr686708	regulatory region 686708	1459 bp proximal
Rr686709	regulatory region 686709	1483 bp proximal
Tssr87065	transcription start site region 87065	1544 bp upstream
Tssr91491	transcription start site region 91491	1346 bp downstream
Tssr91492	transcription start site region 91492	1414 bp downstream