rs16789179 SNP Detail

Summary

• ID
  rs16789179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58766131 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTCA AACAAGCTAT GATCCCACCT
  R
  AGGCAAGAGG ATTGCTATGA GTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24741493	Cflar_AN7621_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16789179					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58766131 () rs orientation: reverse

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411489	regulatory region 411489	701 bp distal
Rr411490	regulatory region 411490	34 bp proximal
Rr411491	regulatory region 411491	1295 bp proximal
Tssr6800	transcription start site region 6800	909 bp downstream
Tssr6801	transcription start site region 6801	897 bp downstream
Tssr6802	transcription start site region 6802	866 bp downstream
Tssr6803	transcription start site region 6803	794 bp downstream
Tssr6804	transcription start site region 6804	750 bp downstream
Tssr6805	transcription start site region 6805	278 bp upstream
Tssr6806	transcription start site region 6806	1643 bp upstream
Tssr6807	transcription start site region 6807	1680 bp upstream
Tssr6808	transcription start site region 6808	1741 bp upstream
Tssr11790	transcription start site region 11790	1074 bp upstream
Tssr11791	transcription start site region 11791	120 bp downstream