rs16789186 SNP Detail

Summary

• ID
  rs16789186
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58768382 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTGTCAAATC GAAAAGTTGA
  TATAAGCCAG GCCTGTCAAT TTTACAGAAA TCAGGACCAA GTCTAAGCAT AAAAAACACC
  CAAGGCACAT GAGGATTTAG TACCAACCTA GTCTCAATTA AAAACCAATT CTCTTGCTAC
  CAGTATTATG AAAACCCGCC TCAGATGTCT GAATCCTGGA CACATGGCAG CAGGCTGCCC
  W
  CCCCCGTCGT CATACCACAA GGGGCACGTT CTGGAACAGG CACCGAGCAA AGACAACTCA
  CCTTGTCCTT GGCTATCTTG CCTCTGCCTG TGTAATCCCT TGTAAGGAAA ACTAAGGAGG
  ATACATCGTT CTGATCTAAG CTCTCACCAA TCTCCATCAG CAGGACCCTG TAAACCATAA
  AAGTGTCTTC AGTAAACCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24741501	Cflar_AN7623_7	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16789186					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58768382 () rs orientation: reverse

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411490	regulatory region 411490	1767 bp distal
Rr411491	regulatory region 411491	793 bp distal
Tssr6805	transcription start site region 6805	1962 bp downstream
Tssr6806	transcription start site region 6806	597 bp downstream
Tssr6807	transcription start site region 6807	525 bp downstream
Tssr6808	transcription start site region 6808	499 bp downstream
Tssr6809	transcription start site region 6809	334 bp upstream