rs16789239 SNP Detail

Summary

• ID
  rs16789239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58779669 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGCAGAATAA AGATAATTTG
  AAAGAGAGAA GATGGGTCAC ATGCCCTTGT AGAAGCCTGA AGTAGCACCA AGAATCAACT
  TTCTAAGCCA GCACAAATGG AGGCTTTCCA CTGCTTCCTC TGCAGAGGCT CCACCCGGGC
  AAAAGCCAGG GCTTGACACA GTTCAGCCGC CACTCAGAAC TTCCCTGCAT CCCAAAGCTC
  W
  TTCAAGCCTT CCCCTTGAAC ATAATTTTTC TTTGTTATAT TCAAGGTTCC TGTTCACTGA
  GTTCTCAGGA GAATTATGCA CAGGCACCAA GTTGTCACAA AGAATTTTAA AGAACAGTTT
  TTGTTTGCTT TGTAAGACGT CAGTGTACTA GTATATACCC TTGCATGCAA TACCAAATCA
  GAGAATTTAT TCTTTACCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24741560	Cflar_AN7631_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16789239					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58779669 () rs orientation: reverse

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411493	regulatory region 411493	525 bp distal
Rr411494	regulatory region 411494	1992 bp proximal
Tssr6811	transcription start site region 6811	1837 bp downstream
Tssr6812	transcription start site region 6812	1513 bp downstream