rs16790804 SNP Detail

Summary

• ID
  rs16790804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037595 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

     ATTGTTG TTGTATTCTA CTCTCTCCTG TTATAACCTG NCTATCACAG GCTGGCACAC
  TCAGGAGTGC ACNGAGGACT TCACGTTGTT TNTGAGATGT ACATNTGTAG ACCCTTTGAG
  Accacacgtg gtagcacncg cctacaattc ctccactcng cangctgagg caggatcctn
  R
  gagggaggat caggaaccca gtgttagcct gggctgtgga atgcaaatac ctactttaaa
  acaaCCAANG NACAGGTGGG CGGAGGAACC TAAGNGCTNT ATTTTAAACT CTTTACTGGT
  TCATATTACA GGTGATTTAA ATTCTTTAAT GTGTCTGTGC ATGATTTATA TGCTTTCAGT
  GCCTTGCATA TTTTACTTAA TAATACTGTT GCTGTAACNC CATGGTTTCT TGGTGAAGAG
  AAAAGTAATC TACATTTCCT TTGGCTGCAG AAGAAAGGGA TACAAGNCAG AAGAACTTGG
  CTGCAAAGTC ATTGTGAGTC TNCTCTTTTG TCTCGGGGGG GGGGGGGGGG GAGTGCCTTG
  CTTCCTC                                                          
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743328	Gclm_AN8137_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790804					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037595 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1271 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1611 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	136 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1253 bp upstream
Rr584261	regulatory region 584261	832 bp distal
Rr584262	regulatory region 584262	94 bp distal
Rr584263	regulatory region 584263	727 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	796 bp proximal
Rr584266	regulatory region 584266	1394 bp proximal
Rr584267	regulatory region 584267	1527 bp proximal
Tssr1039	transcription start site region 1039	1797 bp upstream
Tssr31477	transcription start site region 31477	817 bp downstream
Tssr31478	transcription start site region 31478	1530 bp upstream
Tssr31479	transcription start site region 31479	1617 bp upstream
Tssr31480	transcription start site region 31480	1635 bp upstream
Tssr31481	transcription start site region 31481	1664 bp upstream
Tssr31482	transcription start site region 31482	1679 bp upstream
Tssr31483	transcription start site region 31483	1830 bp upstream
Tssr31484	transcription start site region 31484	1964 bp upstream
Tssr35443	transcription start site region 35443	1273 bp downstream
Tssr35444	transcription start site region 35444	1356 bp downstream