rs16790805 SNP Detail

Summary

• ID
  rs16790805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037526 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                             ATTGTT
  GTTGTATTCT ACTCTCTCCT GTTATAACCT GNCTATCACA GGCTGGCACA CTCAGGAGTG
  CACNGAGGAC TTCACGTTGT TTNTGAGATG TACATNTGTA GACCCTTTGA GAccacacgt
  ggtagcacnc gcctacaatt cctccactcn gcangctgag gcaggatcct nngagggagg
  atcaggaacc cagtgttagc ctgggctgtg gaatgcaaat acctacttta aaacaaCCAA
  Y
  GNACAGGTGG GCGGAGGAAC CTAAGNGCTN TATTTTAAAC TCTTTACTGG TTCATATTAC
  AGGTGATTTA AATTCTTTAA TGTGTCTGTG CATGATTTAT ATGCTTTCAG TGCCTTGCAT
  ATTTTACTTA ATAATACTGT TGCTGTAACN CCATGGTTTC TTGGTGAAGA GAAAAGTAAT
  CTACATTTCC TTTGGCTGCA GAAGAAAGGG ATACAAGNCA GAAGAACTTG GCTGCAAAGT
  CATTGTGAGT CTNCTCTTTT GTCTCGGGGG GGGGGGGGGG GGAGTGCCTT GCTTCCTC  
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743329	Gclm_AN8137_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790805					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037526 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1340 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1680 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	67 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1322 bp upstream
Rr584261	regulatory region 584261	763 bp distal
Rr584262	regulatory region 584262	25 bp distal
Rr584263	regulatory region 584263	658 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	865 bp proximal
Rr584266	regulatory region 584266	1463 bp proximal
Rr584267	regulatory region 584267	1596 bp proximal
Tssr1039	transcription start site region 1039	1866 bp upstream
Tssr31477	transcription start site region 31477	748 bp downstream
Tssr31478	transcription start site region 31478	1599 bp upstream
Tssr31479	transcription start site region 31479	1686 bp upstream
Tssr31480	transcription start site region 31480	1704 bp upstream
Tssr31481	transcription start site region 31481	1733 bp upstream
Tssr31482	transcription start site region 31482	1748 bp upstream
Tssr31483	transcription start site region 31483	1899 bp upstream
Tssr35443	transcription start site region 35443	1342 bp downstream
Tssr35444	transcription start site region 35444	1425 bp downstream