rs16790807 SNP Detail

Summary

• ID
  rs16790807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037500 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGACA GGTGGGCGGA GGAACCTAAG
  Y
  GCTGTATTTT AAACTCTTTA CTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743331	Gclm_AN8137_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	T	C	T	C
ss45546920	mCV23980395	ABI	CRAMUS_MOUSE	r	SNP										G		A
ss135737745	ENSMUSSNP4085162	ENSEMBL	ENSEMBL_Sanger	r	SNP												A
ss320909878	CHEV_3_121946769	CHEVERUD	SCREENING_POP	r	SNP														G								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790807					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037500 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1366 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1706 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	41 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1348 bp upstream
Rr584261	regulatory region 584261	737 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	632 bp distal
Rr584264	regulatory region 584264	2 bp proximal
Rr584265	regulatory region 584265	891 bp proximal
Rr584266	regulatory region 584266	1489 bp proximal
Rr584267	regulatory region 584267	1622 bp proximal
Tssr1039	transcription start site region 1039	1892 bp upstream
Tssr31477	transcription start site region 31477	722 bp downstream
Tssr31478	transcription start site region 31478	1625 bp upstream
Tssr31479	transcription start site region 31479	1712 bp upstream
Tssr31480	transcription start site region 31480	1730 bp upstream
Tssr31481	transcription start site region 31481	1759 bp upstream
Tssr31482	transcription start site region 31482	1774 bp upstream
Tssr31483	transcription start site region 31483	1925 bp upstream
Tssr35443	transcription start site region 35443	1368 bp downstream
Tssr35444	transcription start site region 35444	1451 bp downstream