rs16790808 SNP Detail

Summary

• ID
  rs16790808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037496 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                            ATTGTT GTTGTATTCT ACTCTCTCCT GTTATAACCT
  GNCTATCACA GGCTGGCACA CTCAGGAGTG CACNGAGGAC TTCACGTTGT TTNTGAGATG
  TACATNTGTA GACCCTTTGA GAccacacgt ggtagcacnc gcctacaatt cctccactcn
  gcangctgag gcaggatcct nngagggagg atcaggaacc cagtgttagc ctgggctgtg
  gaatgcaaat acctacttta aaacaaCCAA NGNACAGGTG GGCGGAGGAA CCTAAGNGCT
  R
  TATTTTAAAC TCTTTACTGG TTCATATTAC AGGTGATTTA AATTCTTTAA TGTGTCTGTG
  CATGATTTAT ATGCTTTCAG TGCCTTGCAT ATTTTACTTA ATAATACTGT TGCTGTAACN
  CCATGGTTTC TTGGTGAAGA GAAAAGTAAT CTACATTTCC TTTGGCTGCA GAAGAAAGGG
  ATACAAGNCA GAAGAACTTG GCTGCAAAGT CATTGTGAGT CTNCTCTTTT GTCTCGGGGG
  GGGGGGGGGG GGAGTGCCTT GCTTCCTC                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743332	Gclm_AN8137_12	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790808					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037496 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1370 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1710 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	37 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1352 bp upstream
Rr584261	regulatory region 584261	733 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	628 bp distal
Rr584264	regulatory region 584264	6 bp proximal
Rr584265	regulatory region 584265	895 bp proximal
Rr584266	regulatory region 584266	1493 bp proximal
Rr584267	regulatory region 584267	1626 bp proximal
Tssr1039	transcription start site region 1039	1896 bp upstream
Tssr31477	transcription start site region 31477	718 bp downstream
Tssr31478	transcription start site region 31478	1629 bp upstream
Tssr31479	transcription start site region 31479	1716 bp upstream
Tssr31480	transcription start site region 31480	1734 bp upstream
Tssr31481	transcription start site region 31481	1763 bp upstream
Tssr31482	transcription start site region 31482	1778 bp upstream
Tssr31483	transcription start site region 31483	1929 bp upstream
Tssr35443	transcription start site region 35443	1372 bp downstream
Tssr35444	transcription start site region 35444	1455 bp downstream