rs16790810 SNP Detail

Summary

• ID
  rs16790810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037308 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                   ATTG TTGTTGTATT CTACTCTCTC CTGTTATAAC CTGNCTATCA
  CAGGCTGGCA CACTCAGGAG TGCACNGAGG ACTTCACGTT GTTTNTGAGA TGTACATNTG
  TAGACCCTTT GAGAccacac gtggtagcac ncgcctacaa ttcctccact cngcangctg
  aggcaggatc ctnngaggga ggatcaggaa cccagtgtta gcctgggctg tggaatgcaa
  atacctactt taaaacaaCC AANGNACAGG TGGGCGGAGG AACCTAAGNG CTNTATTTTA
  AACTCTTTAC TGGTTCATAT TACAGGTGAT TTAAATTCTT TAATGTGTCT GTGCATGATT
  TATATGCTTT CAGTGCCTTG CATATTTTAC TTAATAATAC TGTTGCTGTA ACNCCATGGT
  TTCTTGGTGA AGAGAAAAGT AATCTACATT TCCTTTGGCT GCAGAAGAAA GGGATACAAG
  Y
  CAGAAGAACT TGGCTGCAAA GTCATTGTGA GTCTNCTCTT TTGTCTCGGG GGGGGGGGGG
  GGGGAGTGCC TTGCTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743334	Gclm_AN8137_14	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790810					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037308 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1558 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1898 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1540 bp upstream
Rr584261	regulatory region 584261	545 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	440 bp distal
Rr584264	regulatory region 584264	194 bp proximal
Rr584265	regulatory region 584265	1083 bp proximal
Rr584266	regulatory region 584266	1681 bp proximal
Rr584267	regulatory region 584267	1814 bp proximal
Tssr31477	transcription start site region 31477	530 bp downstream
Tssr31478	transcription start site region 31478	1817 bp upstream
Tssr31479	transcription start site region 31479	1904 bp upstream
Tssr31480	transcription start site region 31480	1922 bp upstream
Tssr31481	transcription start site region 31481	1951 bp upstream
Tssr31482	transcription start site region 31482	1966 bp upstream
Tssr35443	transcription start site region 35443	1560 bp downstream
Tssr35444	transcription start site region 35444	1643 bp downstream