rs16790811 SNP Detail

Summary

• ID
  rs16790811
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037273 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CATATTACAG GTGATTTAAA
  TTCTTTAATG TGTCTGTGCA TGATTTATAT GCTTTCAGTG CCTTGCATAT TTTACTTAAT
  AATACTGTTG CTGTAACTCC ATGGTTTCTT GGTGAAGAGA AAAGTAATCT ACATTTCCTT
  TGGCTGCAGA AGAAAGGGAT ACAAGCCAGA AGAACTTGGC TGCAAAGTCA TTGTGAGTCT
  S
  CTCTTTTGTC TCGGGGAGGG GGGGGGGGGA GGTGCCTTGC TTCCTCCTTG GGTACACTGT
  AAGCTTTGTT TTCAGGAGCC TTAACCCTCT CCTGGGAAGG ACCAACAAAC AGAACTAAGG
  GGTGGCGGGG ATACATGGAA AAGTATACGC TCTGAGTCTA TTCACACAAA CTAATTAATA
  AACAAAATTA AACTACCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743335	Gclm_AN8137_15	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790811					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037273 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1593 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1933 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1575 bp upstream
Rr584261	regulatory region 584261	510 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	405 bp distal
Rr584264	regulatory region 584264	229 bp proximal
Rr584265	regulatory region 584265	1118 bp proximal
Rr584266	regulatory region 584266	1716 bp proximal
Rr584267	regulatory region 584267	1849 bp proximal
Tssr31477	transcription start site region 31477	495 bp downstream
Tssr31478	transcription start site region 31478	1852 bp upstream
Tssr31479	transcription start site region 31479	1939 bp upstream
Tssr31480	transcription start site region 31480	1957 bp upstream
Tssr31481	transcription start site region 31481	1986 bp upstream
Tssr35443	transcription start site region 35443	1595 bp downstream
Tssr35444	transcription start site region 35444	1678 bp downstream