rs16791863 SNP Detail

Summary

• ID
  rs16791863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141941145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CAGCTGGGTT CAACAGAATC
  Y
  TATCCATGGG GCAGCACTTC TCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ
ss24744759	Ctsd_AN7747_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ
rs16791863					SNP	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141941145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	25 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	424 bp proximal
Rr658155	regulatory region 658155	439 bp proximal
Tssr70145	transcription start site region 70145	1919 bp downstream
Tssr70146	transcription start site region 70146	1898 bp downstream
Tssr70147	transcription start site region 70147	397 bp downstream
Tssr70148	transcription start site region 70148	762 bp upstream
Tssr70149	transcription start site region 70149	818 bp upstream
Tssr75787	transcription start site region 75787	1819 bp upstream
Tssr75788	transcription start site region 75788	1797 bp upstream
Tssr75789	transcription start site region 75789	1777 bp upstream
Tssr75790	transcription start site region 75790	1507 bp upstream
Tssr75791	transcription start site region 75791	1484 bp upstream
Tssr75792	transcription start site region 75792	1471 bp upstream
Tssr75793	transcription start site region 75793	725 bp upstream
Tssr75794	transcription start site region 75794	560 bp upstream
Tssr75795	transcription start site region 75795	529 bp upstream
Tssr75796	transcription start site region 75796	412 bp downstream
Tssr75797	transcription start site region 75797	445 bp downstream
Tssr75798	transcription start site region 75798	487 bp downstream
Tssr75799	transcription start site region 75799	511 bp downstream