rs16791872 SNP Detail

Summary

• ID
  rs16791872
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141941468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTACTGTA CCCTCCTGTT
  CGACCATAGG AGTCATAGGA GTGGAGAGGG GCCCAGGAGA CCCCTGCCTT TTGAGTGTCT
  CGCCCCATAG TCTGTGGGAC CCTGAGGAAG GCTGCGCTGG GTGCACAGGT GCATTCCAGC
  ACGGCCGGAG CACGCGGCAC TCCAGGTGAC GAGCCCCGCA TCTCCGGACC CAGAGCGGGT
  M
  CTCACCTGAT AATCGCGAAG GAGGACGAAG CCAGGAGGCC GAGAATGAGC AGCAAGACGC
  CGGGAGTCTT CATGGTCGCG GCGGCCCGAA GAGAGCAAAG CTTAAAGCCA GAGGTCGCCG
  GCTTATAGGC AGGATGACGC CGCAGTCCCG CGGAGTCAGC TGACCCGCTT GTTTGGCCCT
  CAACGGGTCA CGTGAGACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J
ss24744768	Ctsd_AN7747_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J
rs16791872					SNP	C	C	C	C	C	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141941468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	within coordinates
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	101 bp proximal
Rr658155	regulatory region 658155	116 bp proximal
Tssr70147	transcription start site region 70147	720 bp downstream
Tssr70148	transcription start site region 70148	439 bp upstream
Tssr70149	transcription start site region 70149	495 bp upstream
Tssr75790	transcription start site region 75790	1830 bp upstream
Tssr75791	transcription start site region 75791	1807 bp upstream
Tssr75792	transcription start site region 75792	1794 bp upstream
Tssr75793	transcription start site region 75793	1048 bp upstream
Tssr75794	transcription start site region 75794	883 bp upstream
Tssr75795	transcription start site region 75795	852 bp upstream
Tssr75796	transcription start site region 75796	89 bp downstream
Tssr75797	transcription start site region 75797	122 bp downstream
Tssr75798	transcription start site region 75798	164 bp downstream
Tssr75799	transcription start site region 75799	188 bp downstream