rs16791874 SNP Detail

Summary

• ID
  rs16791874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939027 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CAGTGTCAGA GTTACTCAAA
  AACTACCTGG ATGTGAGTGC AGTTGTATTT TGGGGTCTTG CTTTGAGGGG TGAGTGTGGG
  AGGAGCTAGC TCCCTGGGCT AAGTAGCCAG TTCTTCATGG AAGCCCACCC ACAATACACC
  ATTCCTTGCT TAACAGCCCC TCATTCTTGC CATCCTAGAA TCCTTGCTTC TCTGAAATGC
  W
  CAGACTAAAG GATGGGTTAG GGTGGCATTG CTTGGTATTT GCAAAAGGTT CTTTCTGGGT
  CTGAGATTCT TTTCCTTTTT GAGGGGGAAT AGGGTGGGGT GGTGCTAGGA CTGAGTCTAG
  GGACCCCCTG TAGGATAGGC AAGTACTTAG TCCCTGAGCG ACACCTTTCC AGCCCCACAT
  TAAGTCTTGA ACATAGATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	FVB	MOLF
ss24744770	Ctsd_AN7748_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	FVB	MOLF
rs16791874					SNP	T	T	T	T	T	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939027 () rs orientation: reverse

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	918 bp upstream
Rr658152	regulatory region 658152	607 bp distal
Rr658153	regulatory region 658153	525 bp proximal
Tssr70144	transcription start site region 70144	1815 bp downstream
Tssr70145	transcription start site region 70145	168 bp upstream
Tssr70146	transcription start site region 70146	200 bp upstream
Tssr70147	transcription start site region 70147	1710 bp upstream
Tssr75784	transcription start site region 75784	1824 bp upstream
Tssr75785	transcription start site region 75785	1795 bp upstream
Tssr75786	transcription start site region 75786	1754 bp upstream
Tssr75787	transcription start site region 75787	216 bp downstream
Tssr75788	transcription start site region 75788	303 bp downstream
Tssr75789	transcription start site region 75789	326 bp downstream
Tssr75790	transcription start site region 75790	589 bp downstream
Tssr75791	transcription start site region 75791	617 bp downstream
Tssr75792	transcription start site region 75792	638 bp downstream
Tssr75793	transcription start site region 75793	1381 bp downstream
Tssr75794	transcription start site region 75794	1535 bp downstream
Tssr75795	transcription start site region 75795	1559 bp downstream