rs16791875 SNP Detail

Summary

• ID
  rs16791875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938911 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGT GGGGTGGTGC TAGGACTGAG
  Y
  CTAGGGACCC CCTGTAGGAT AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	LG/J	MOLF	SM/J
ss24744771	Ctsd_AN7748_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	C	C		C
ss322471192	CHEV_7_149571079	CHEVERUD	SCREENING_POP	r	SNP							G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	LG/J	MOLF	SM/J
rs16791875					SNP	T	T	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938911 () rs orientation: reverse

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	1034 bp upstream
Rr658152	regulatory region 658152	491 bp distal
Rr658153	regulatory region 658153	641 bp proximal
Tssr70144	transcription start site region 70144	1699 bp downstream
Tssr70145	transcription start site region 70145	284 bp upstream
Tssr70146	transcription start site region 70146	316 bp upstream
Tssr70147	transcription start site region 70147	1826 bp upstream
Tssr75784	transcription start site region 75784	1708 bp upstream
Tssr75785	transcription start site region 75785	1679 bp upstream
Tssr75786	transcription start site region 75786	1638 bp upstream
Tssr75787	transcription start site region 75787	332 bp downstream
Tssr75788	transcription start site region 75788	419 bp downstream
Tssr75789	transcription start site region 75789	442 bp downstream
Tssr75790	transcription start site region 75790	705 bp downstream
Tssr75791	transcription start site region 75791	733 bp downstream
Tssr75792	transcription start site region 75792	754 bp downstream
Tssr75793	transcription start site region 75793	1497 bp downstream
Tssr75794	transcription start site region 75794	1651 bp downstream
Tssr75795	transcription start site region 75795	1675 bp downstream