rs16791877 SNP Detail

Summary

• ID
  rs16791877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GAGAACATGT CGGAAGACGG
  Y
  AACACAGGCG GCTAACATCC TGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	FVB	LG/J	SM/J
ss24744778	Ctsd_AN7754_1	ROCHEBIO	RPAMM	f	SNP	T	T	C	C	T
ss322471180	CHEV_7_149567325	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	FVB	LG/J	SM/J
rs16791877					SNP	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935157 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	within coordinates
Rr658151	regulatory region 658151	within coordinates
Tssr70137	transcription start site region 70137	622 bp downstream
Tssr70138	transcription start site region 70138	574 bp downstream
Tssr70139	transcription start site region 70139	555 bp downstream
Tssr70140	transcription start site region 70140	528 bp downstream
Tssr70141	transcription start site region 70141	507 bp downstream
Tssr70142	transcription start site region 70142	460 bp downstream
Tssr70143	transcription start site region 70143	1204 bp upstream
Tssr75774	transcription start site region 75774	611 bp upstream
Tssr75775	transcription start site region 75775	606 bp upstream
Tssr75776	transcription start site region 75776	585 bp upstream
Tssr75777	transcription start site region 75777	534 bp upstream
Tssr75778	transcription start site region 75778	521 bp upstream
Tssr75779	transcription start site region 75779	486 bp upstream
Tssr75780	transcription start site region 75780	470 bp upstream
Tssr75781	transcription start site region 75781	452 bp upstream
Tssr75782	transcription start site region 75782	424 bp upstream
Tssr75783	transcription start site region 75783	1196 bp downstream