rs16791886 SNP Detail

Summary

• ID
  rs16791886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTAGACA CGAGAAGCAG
  GCGAGAGACG ATACTGCCTC AGCTCCCACC TTGCCTACAC CCTCCCACAT CTATATCCAC
  TAGGACAGTG TAGTTCTTGC CCTTGGACTT GGGGACAAGC CACTGAGCCT GCAGCCTGAG
  CAGCTGGGTA AACCCACAAC TGTCACCGTG AAGCCACACT CTTTCTGCCT ACCATCAGCC
  Y
  GTCCCACAAA GCTGTGGCTG CAGATAGAAC CAGAGCAGGA AGTGGAAAGA GCTGCTGCTG
  AGAACATGTC GGAAGACGGT AACACAGGCG GCTAACATCC TGTGCACTGA GGGGCCCCTG
  AGAAGTACCA CAAGGAACCC TCCACAGACA GGGAAAGGGC AGAGCCAGGT ACAGGGTACT
  ACACCACCCA GACAAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB
ss24744790	Ctse_AN7762_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB
rs16791886					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935077 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	within coordinates
Rr658151	regulatory region 658151	within coordinates
Tssr70137	transcription start site region 70137	542 bp downstream
Tssr70138	transcription start site region 70138	494 bp downstream
Tssr70139	transcription start site region 70139	475 bp downstream
Tssr70140	transcription start site region 70140	448 bp downstream
Tssr70141	transcription start site region 70141	427 bp downstream
Tssr70142	transcription start site region 70142	380 bp downstream
Tssr70143	transcription start site region 70143	1284 bp upstream
Tssr75774	transcription start site region 75774	531 bp upstream
Tssr75775	transcription start site region 75775	526 bp upstream
Tssr75776	transcription start site region 75776	505 bp upstream
Tssr75777	transcription start site region 75777	454 bp upstream
Tssr75778	transcription start site region 75778	441 bp upstream
Tssr75779	transcription start site region 75779	406 bp upstream
Tssr75780	transcription start site region 75780	390 bp upstream
Tssr75781	transcription start site region 75781	372 bp upstream
Tssr75782	transcription start site region 75782	344 bp upstream
Tssr75783	transcription start site region 75783	1276 bp downstream