rs16791887 SNP Detail

Summary

• ID
  rs16791887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGACAC GAGAAGCAGG
  CGAGAGACGA TACTGCCTCA GCTCCCACCT TGCCTACACC CTCCCACATC TATATCCACT
  AGGACAGTGT AGTTCTTGCC CTTGGACTTG GGGACAAGCC ACTGAGCCTG CAGCCTGAGC
  AGCTGGGTAA ACCCACAACT GTCACCGTGA AGCCACACTC TTTCTGCCTA CCATCAGCCT
  R
  TCCCACAAAG CTGTGGCTGC AGATAGAACC AGAGCAGGAA GTGGAAAGAG CTGCTGCTGA
  GAACATGTCG GAAGACGGTA ACACAGGCGG CTAACATCCT GTGCACTGAG GGGCCCCTGA
  GAAGTACCAC AAGGAACCCT CCACAGACAG GGAAAGGGCA GAGCCAGGTA CAGGGTACTA
  CACCACCCAG ACAAAGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB
ss24744791	Ctse_AN7762_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB
rs16791887					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935078 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	within coordinates
Rr658151	regulatory region 658151	within coordinates
Tssr70137	transcription start site region 70137	543 bp downstream
Tssr70138	transcription start site region 70138	495 bp downstream
Tssr70139	transcription start site region 70139	476 bp downstream
Tssr70140	transcription start site region 70140	449 bp downstream
Tssr70141	transcription start site region 70141	428 bp downstream
Tssr70142	transcription start site region 70142	381 bp downstream
Tssr70143	transcription start site region 70143	1283 bp upstream
Tssr75774	transcription start site region 75774	532 bp upstream
Tssr75775	transcription start site region 75775	527 bp upstream
Tssr75776	transcription start site region 75776	506 bp upstream
Tssr75777	transcription start site region 75777	455 bp upstream
Tssr75778	transcription start site region 75778	442 bp upstream
Tssr75779	transcription start site region 75779	407 bp upstream
Tssr75780	transcription start site region 75780	391 bp upstream
Tssr75781	transcription start site region 75781	373 bp upstream
Tssr75782	transcription start site region 75782	345 bp upstream
Tssr75783	transcription start site region 75783	1275 bp downstream