rs16791888 SNP Detail

Summary

• ID
  rs16791888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131565866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCACTGT GACCTTGGCA CCTGGCCACA
  GCTGGCTCAA CAAAAAACAA TCTTGTGTTT ATGGAAATAA TGTCCTCTAC TGCCTCTGCA
  CATCCTTTAt ttattttatt tttatggaga caaggtctca tgtaccacag gctagcctcg
  R
  gtcagtatgt agctgaggct ggccccaaat tcctgatatg tctgtatcca cctctcacac
  aggggaatta gagacatgca ccaccatgcc taccttcctt tacttgactt TAAAGTCTGT
  TTCCTGTTTA TTTGAAAGAG CAGGCACACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
ss24744792	Ctse_AN7763_1	ROCHEBIO	RPAMM	f	SNP	G	A	A	G	A	G		A
ss45173287	mCV25112552	ABI	CRAMUS_MOUSE	f	SNP			A				A		G
ss145480050	ENSMUSSNP1811751	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss319974767	CHEV_1_133534705	CHEVERUD	SCREENING_POP	f	SNP										G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
rs16791888					SNP	G	A	A	G	A	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131565866 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	186 bp upstream
Rr12195	regulatory region 12195	466 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	86 bp upstream
Tssr8635	transcription start site region 8635	142 bp upstream
Tssr8636	transcription start site region 8636	178 bp upstream
Tssr8637	transcription start site region 8637	226 bp upstream
Tssr8638	transcription start site region 8638	260 bp upstream
Tssr8639	transcription start site region 8639	312 bp upstream
Tssr8640	transcription start site region 8640	357 bp upstream