rs16791889 SNP Detail

Summary

• ID
  rs16791889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131565893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT ATGTAGCTGA GGCTGGCCCC
  R
  AATTCCTGAT ATGTCTGTAT CCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
ss24744793	Ctse_AN7763_2	ROCHEBIO	RPAMM	f	SNP	G	A	A	G	G	G		G
ss44998638	mCV25112464	ABI	CRAMUS_MOUSE	f	SNP			A				A		G
ss145480055	ENSMUSSNP4798116	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss319974768	CHEV_1_133534732	CHEVERUD	SCREENING_POP	f	SNP										G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
rs16791889					SNP	G	A	A	G	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131565893 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	159 bp upstream
Rr12195	regulatory region 12195	493 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	59 bp upstream
Tssr8635	transcription start site region 8635	115 bp upstream
Tssr8636	transcription start site region 8636	151 bp upstream
Tssr8637	transcription start site region 8637	199 bp upstream
Tssr8638	transcription start site region 8638	233 bp upstream
Tssr8639	transcription start site region 8639	285 bp upstream
Tssr8640	transcription start site region 8640	330 bp upstream