rs16793480 SNP Detail

Summary

• ID
  rs16793480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45818148 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCGA GCTCCGGGCG CTCCGCCGAC
  R
  GCTTCTGTCA CAGGCCCGTG AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J
ss24746559	Pcsk7_AN6083_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J
rs16793480					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45818148 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	within coordinates
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	454 bp distal
Rr677993	regulatory region 677993	343 bp distal
Rr677994	regulatory region 677994	388 bp distal
Rr677995	regulatory region 677995	within coordinates
Rr677996	regulatory region 677996	320 bp distal
Rr677997	regulatory region 677997	9 bp proximal
Rr677998	regulatory region 677998	146 bp proximal
Rr677999	regulatory region 677999	808 bp proximal
Tssr84815	transcription start site region 84815	298 bp downstream
Tssr84816	transcription start site region 84816	75 bp upstream
Tssr89273	transcription start site region 89273	413 bp upstream
Tssr89274	transcription start site region 89274	within coordinates
Tssr89275	transcription start site region 89275	48 bp downstream
Tssr89276	transcription start site region 89276	735 bp downstream