rs16794163 SNP Detail

Summary

• ID
  rs16794163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATTAAT GATGAATTGC
  AATTTCTCCA TGGCAGATAG GAATGGTGGG CTGCAACCCC TACCCCAGAC CTCCCCTTCC
  TGCAGTCATT AGCTCCTACC TGGACTTGGG AAGTAGACAA TGGTGTACGG CGGCACTGGG
  GGACAGGAGA AGAATGTTAG GTAGAAGAAG GGGAATGATT AGGGTTCAGT GTGGTGCACT
  Y
  TCCCGCTCCA TCTCCCGGGT CCCTTTTCTG ATTTGTTCCC CACACCCCGT CCCAGGCTCC
  TGGTGCAAAA TGCCCGGTGC AGAGAGCTCA GTCCAGAGCG AGCCCTGGCC CCGACAGCTG
  CAAGCTGGTA GTTCGGGGAA GCTTCAGGGC GTGGACTCAC TGGCTGCTGT GCAGAGAGAA
  GTGGGGATCA AGTGCTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss24747292	Gstp1_JC6074_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs16794163					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092004 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357953	regulatory region 357953	997 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	226 bp downstream
Tssr157439	transcription start site region 157439	239 bp downstream