rs16794164 SNP Detail

Summary

• ID
  rs16794164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGATAGG AATGGTGGGC
  TGCAACCCCT ACCCCAGACC TCCCCTTCCT GCAGTCATTA GCTCCTACCT GGACTTGGGA
  AGTAGACAAT GGTGTACGGC GGCACTGGGG GACAGGAGAA GAATGTTAGG TAGAAGAAGG
  GGAATGATTA GGGTTCAGTG TGGTGCACTT TCCCGCTCCA TCTCCCGGGT CCCTTTTCTG
  R
  TTTGTTCCCC ACACCCCGTC CCAGGCTCCT GGTGCAAAAT GCCCGGTGCA GAGAGCTCAG
  TCCAGAGCGA GCCCTGGCCC CGACAGCTGC AAGCTGGTAG TTCGGGGAAG CTTCAGGGCG
  TGGACTCACT GGCTGCTGTG CAGAGAGAAG TGGGGATCAA GTGCTGAATA GTCAGAGAGG
  TGTCTCAGGG ATGGAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J
ss24747294	Gstp1_JC6074_12	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J
rs16794164					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092035 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357953	regulatory region 357953	966 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	195 bp downstream
Tssr157439	transcription start site region 157439	208 bp downstream