rs16794165 SNP Detail

Summary

• ID
  rs16794165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCTTC CTGCAGTCAT
  TAGCTCCTAC CTGGACTTGG GAAGTAGACA ATGGTGTACG GCGGCACTGG GGGACAGGAG
  AAGAATGTTA GGTAGAAGAA GGGGAATGAT TAGGGTTCAG TGTGGTGCAC TTTCCCGCTC
  CATCTCCCGG GTCCCTTTTC TGATTTGTTC CCCACACCCC GTCCCAGGCT CCTGGTGCAA
  R
  ATGCCCGGTG CAGAGAGCTC AGTCCAGAGC GAGCCCTGGC CCCGACAGCT GCAAGCTGGT
  AGTTCGGGGA AGCTTCAGGG CGTGGACTCA CTGGCTGCTG TGCAGAGAGA AGTGGGGATC
  AAGTGCTGAA TAGTCAGAGA GGTGTCTCAG GGATGGAAGC AAACACAGGC CCCAGGACAG
  CCAGCCTTAT AAGGGGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss24747295	Gstp1_JC6074_13	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs16794165					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092073 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357953	regulatory region 357953	928 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	157 bp downstream
Tssr157439	transcription start site region 157439	170 bp downstream