rs16794836 SNP Detail

Summary

• ID
  rs16794836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:104305926 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATA TACAACCAGC GTGAGGGCCA
  Y
  AGGCATCCTA ATGAAGTATA GTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss24748180	Serpina3k_JC7999_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs16794836					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104305926 () rs orientation: reverse

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	Intron
Tssr114842	transcription start site region 114842	1251 bp downstream
Tssr114843	transcription start site region 114843	566 bp downstream
Tssr114844	transcription start site region 114844	430 bp downstream
Tssr114845	transcription start site region 114845	398 bp downstream
Tssr114846	transcription start site region 114846	309 bp downstream
Tssr114847	transcription start site region 114847	286 bp downstream
Tssr114848	transcription start site region 114848	816 bp upstream
Tssr114849	transcription start site region 114849	843 bp upstream
Tssr114850	transcription start site region 114850	860 bp upstream
Tssr114851	transcription start site region 114851	919 bp upstream
Tssr114852	transcription start site region 114852	976 bp upstream
Tssr114853	transcription start site region 114853	1187 bp upstream
Tssr114854	transcription start site region 114854	1330 bp upstream
Tssr117574	transcription start site region 117574	1202 bp downstream