rs16795626 SNP Detail

Summary

• ID
  rs16795626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36787994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCTCAA GCTCTGGGGT
  TTGTAAGAAT TAGAGTGGGC TTCCTGGCTT CCTGAGACCT TCCTCTCCTT TAACCAAGGA
  GAGCAAAGTG ACAGTTTTGA GTCACACATA GAAACTGACC AGAAAAGATG GAGTAAAACC
  CCAATTTGCC CAAACACGGT CAAATTATAA AACTGGCTCC AATTTCTCAC CAAAGATACA
  K
  CTCTTCAACT CAACTTACAG ATCCTATGGA TTCCGTAGGG TGTTTTAAGC CCTCACATCT
  TAAGACCACT CCTTTCCTAA AATTACAGCC ATTGGTTATG GCAAGTGGTT TTAAGGACTA
  GGAGTCTTCT ATTGGCTGTT ACCTGTACCA ATGTCCAAGA GTAATCGAGG GACAAAGGTG
  ACCCTGCAGG AGTAGAGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24749291	S52337_77_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16795626					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36787994 () rs orientation: forward

Symbol	Name	Function Class
Ptn	pleiotrophin	880 bp upstream
Rr135017	regulatory region 135017	1807 bp proximal
Rr146140	regulatory region 146140	193 bp distal
Tssr60337	transcription start site region 60337	1085 bp upstream
Tssr60338	transcription start site region 60338	1059 bp upstream
Tssr60339	transcription start site region 60339	1035 bp upstream
Tssr60340	transcription start site region 60340	1002 bp upstream
Tssr60341	transcription start site region 60341	968 bp upstream
Tssr60342	transcription start site region 60342	933 bp upstream
Tssr60343	transcription start site region 60343	912 bp upstream
Tssr60344	transcription start site region 60344	872 bp upstream