rs16797826 SNP Detail

Summary

• ID
  rs16797826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92551075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGAGA GCATTTAAAT
  GATGGAATGT GCTAAAGTTA TTTAATCAAT CTTCAAAACC AAAGGGCATA GATAATTACA
  AATAAACCAA TAAAATTTGA ACAGTGTAAG AAGAACTTAG CACTGAAGAA TTAAAATGTG
  CTTTCTGTAT CCCTATATCA ATATCAACAT CACCAATAGA TCATTCCTGA CTTAATTCTT
  S
  TTAGCTGAAG ACCAAGTTGG ATTTTGATGT GCCAACTGCT TTTGATGATA TTTCATTTTA
  AACAGATAAA CACTTTTTTA AAAAACGCAA GCCAAAAACA CCCTTTTGAG AAACTAAGAA
  AACAGATGTG GAAGCCATTT GTTTAGATGA AGGGGAATTT TCGCTTTTAT AGAATACAAT
  GATTCATGAA CAGGAAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24751853	Pola1_AN4791_12	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16797826					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92551075 () rs orientation: forward

Symbol	Name	Function Class
Pola1	polymerase (DNA directed), alpha 1	within coordinates