rs16798599 SNP Detail

Summary

• ID
  rs16798599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGGCGT GGCTTTTCTC
  TTAAGATGGG ACCCCAAGTC CTGCAGGCCA GTTTTCCTTA ACATCTCTTC AGCAGCCTCC
  TCCTCTCCAC CCTCCATCAT TCTCCTTGTT CAGATATTTC CCCTCTGTCT TTGTTACCCT
  ATCATAACCT CCTGATGGGC AGCTGCTCTC AGGCCTCCCT GTGTAACAGA ATGTTTTCCC
  R
  TCTGTTGTTC ACTGCAGTTC TCTGTGGAAG GGAAGCCCAT TGTGTTCTGT AGGACCCAGG
  TCCTTCTCTG GTGTGGCTCA GCCTTCCACA GGCCCAGTGC TGGTTGTGGC CAAGAAGCCT
  GTTGAATTCT GGATACTAGA CTGGCATGAG CATCCATTGC TCCTTCCAGG CCATTTTTAC
  ACAGTGCCCT GGGGGGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24752704	Gsta1_JC6043_6	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A	A		A	A		A			A	A		A		A	G			A	A
ss24754151	Gsta1_JC5985_1	ROCHEBIO	RPAMM	r	SNP	T		T		T	T		T		T		C	T			T						C			T
ss61427541	NES16812015	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A	A		G	A	A	A			G		A			G	G			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16798599					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427541	NES16812015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240723 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	134 bp downstream