rs16798900 SNP Detail

Summary

• ID
  rs16798900
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548275 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGTG GCTGTGAGCC TCAGGTTTGG
  S
  TGCTGAGAAC TGAATCTGGG TCCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24753041	Eps8_AN6905_19	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	C	C	C	G	G	C	G	G	G	G	C	C	C	C	C	G	G
ss133873251	ENSMUSSNP5564243	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		C									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16798900					SNP	G	G	G	G	G	C	C	C	G	G	C	G	G	G	G	C	C	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548275 () rs orientation: reverse

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640223	regulatory region 640223	1402 bp distal
Rr640224	regulatory region 640224	271 bp distal
Rr640225	regulatory region 640225	within coordinates
Rr640226	regulatory region 640226	48 bp proximal
Tssr63894	transcription start site region 63894	517 bp upstream
Tssr63895	transcription start site region 63895	469 bp upstream
Tssr63896	transcription start site region 63896	446 bp upstream
Tssr63897	transcription start site region 63897	245 bp upstream
Tssr63898	transcription start site region 63898	223 bp upstream