rs16799087 SNP Detail

Summary

• ID
  rs16799087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548226 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTGC AAGAGAAGGA AGTACTCTTA
  R
  CCATTATTGA AATCTCCAGC TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24753272	Eps8_AN6904_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	G	G	G	A	G	A	A	A	G	G	A	G	A
ss45911325	mCV24060115	ABI	CRAMUS_MOUSE	r	SNP		T		T						C		T
ss133873248	ENSMUSSNP5750008	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		T								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16799087					SNP	A	A	A	A	A	G	G	G	A	G	A	A	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548226 () rs orientation: reverse

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640223	regulatory region 640223	1353 bp distal
Rr640224	regulatory region 640224	222 bp distal
Rr640225	regulatory region 640225	within coordinates
Rr640226	regulatory region 640226	97 bp proximal
Tssr63894	transcription start site region 63894	468 bp upstream
Tssr63895	transcription start site region 63895	420 bp upstream
Tssr63896	transcription start site region 63896	397 bp upstream
Tssr63897	transcription start site region 63897	196 bp upstream
Tssr63898	transcription start site region 63898	174 bp upstream