rs16799089 SNP Detail

Summary

• ID
  rs16799089
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137547967 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGCT TCCCATTGTT ATTTGCTGCT
  M
  TGTTAGTCTC CCCACCTCGG GGAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24753274	Eps8_AN6904_3	ROCHEBIO	RPAMM	f	SNP	A			A	A	A	C	C	C		A	A	C	A	A	A			A	C		C		C		C		A	A
ss45965384	mCV24060106	ABI	CRAMUS_MOUSE	r	SNP			T		T								G		T
ss48108422	NES11849832	PERLEGEN	MM_PANEL2	r	SNP		T			T	T		G		T		T		T	T		T	G			G		T		T		G			T
ss133873239	ENSMUSSNP2019055	ENSEMBL	ENSEMBL_Sanger	r	SNP					T										T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16799089					SNP	A	A	A	A	A	A	C	C	C	A	A	A	C	A	A	A	A	C	A	C	C	C	A	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108422	NES11849832	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137547967 () rs orientation: reverse

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640223	regulatory region 640223	1094 bp distal
Rr640224	regulatory region 640224	within coordinates
Rr640225	regulatory region 640225	38 bp proximal
Rr640226	regulatory region 640226	356 bp proximal
Tssr63894	transcription start site region 63894	209 bp upstream
Tssr63895	transcription start site region 63895	161 bp upstream
Tssr63896	transcription start site region 63896	138 bp upstream
Tssr63897	transcription start site region 63897	38 bp downstream
Tssr63898	transcription start site region 63898	69 bp downstream