rs16799090 SNP Detail

Summary

• ID
  rs16799090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:137547916 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCTT TACCTCCTCA GCGGTGGTGA
  Y
  TTCCTTGTTT AAAAGAGGAG GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24753275	Eps8_AN6904_4	ROCHEBIO	RPAMM	f	SNP	T			T	T	T	C	C	C		T	T	C	T	T	T			T	C		C		C		C		T	T
ss45910011	mCV24060105	ABI	CRAMUS_MOUSE	r	SNP			A		A								G		A
ss48108420	NES11849830	PERLEGEN	MM_PANEL2	r	SNP		A			A	A		G		A		A		A	A		A	G			G		A		A		G			A
ss133873236	ENSMUSSNP1588262	ENSEMBL	ENSEMBL_Sanger	r	SNP					A										A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16799090					SNP	T	T	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T	C	T	C	C	C	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108420	NES11849830	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137547916 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps8	epidermal growth factor receptor pathway substrate 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr640223	regulatory region 640223			1043 bp distal
Rr640224	regulatory region 640224			within coordinates
Rr640225	regulatory region 640225			89 bp proximal
Rr640226	regulatory region 640226			407 bp proximal
Tssr63894	transcription start site region 63894			158 bp upstream
Tssr63895	transcription start site region 63895			110 bp upstream
Tssr63896	transcription start site region 63896			87 bp upstream
Tssr63897	transcription start site region 63897			89 bp downstream
Tssr63898	transcription start site region 63898			120 bp downstream