rs16799403 SNP Detail

Summary

• ID
  rs16799403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240658 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCCC ATCAGGAGGT TATGATAGGG
  Y
  AACAAAGACA GAGGGGAAAT ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SM/J	WSB/EiJ
ss24753656	Gsta1_JC5985_3	ROCHEBIO	RPAMM	f	SNP	T		C		C	T		C		C	T	T	C			C	T			C	T		T
ss46400218	mCV24232329	ABI	CRAMUS_MOUSE	r	SNP		A		G
ss61427543	NES16812013	PERLEGEN	MM_PANEL2	r	SNP		A		G	G		G		A	G		A	G	G	G			A	G			A		G
ss136666893	ENSMUSSNP6111934	ENSEMBL	ENSEMBL_Sanger	r	SNP				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SM/J	WSB/EiJ
rs16799403					SNP	T	T	C	C	C	T	C	C	T	C	T	T	C	C	C	C	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427543	NES16812013	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240658 () rs orientation: reverse

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	69 bp downstream