rs16799404 SNP Detail

Summary

• ID
  rs16799404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCCTGT GACCTCAGTT
  CCTTCCAAAC ATGGAAGTAA TTTTGGATTA AGCTTCTCTG CCCATCCCAG CTGTAGTGAA
  TGGGAGTGAG TTCAGCTCAG ATTTTTCATT ACAACTGGCT ATTGTTATGT ATTTATATGT
  CTATATGGAA AAACATGTTT TTGTCACTTG CAACTTGGCC AGCACATGCA GTTTGCTCTT
  S
  TGAGTGTACA TGTTGCTCAT GGGACTCATC AGTTTGATGC TCTGAATAAA GTTGTCTATT
  GCATGAGACT TTAGTTCACC TCCTTCATGG ACGCCATTCT CCCAGGTCCC ACCTCCTCTA
  GAGCAGAAAA CCAGGACCCT AACAAATTTG TAAGAAGCCC TCGTCCTCTA GGACCATAAT
  TTTAGCTCTT ATCTTTTACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24753663	Gsta1_JC5989_2	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G		G			G	G		G		C			G
ss61427550	NES16812006	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G	G		C	G	G	G			C		G		C	C		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16799404					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427550	NES16812006	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240224 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	363 bp upstream