rs16799454 SNP Detail

Summary

• ID
  rs16799454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49015888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCAGGC ATCTTCCATT
  ACATCCAGCT AGAATCTAGT TTTGAGATGC TATATTTATT CTATTGGATT ACAAATTCAT
  TGAGGAAGTA TTTACAGCCT ATATGCATTT CTTATTGATA TTATTATAAT TAACATGTAG
  CTTGTGTTTT ATCCATAAAG CCCTTATTTT CCTCTATTCC TTCTTGTCTT CACCCCTCCT
  Y
  CCTCCCTCCC TCCTTCCTAT TCCCCTCCCT GTCCCTCTCT TCCTTTCTTC TTTCTCCTTC
  CTTACTTCCA TGCCTTTTTG TGCCAGTCCT TGGTATGTGT ATATATATAT ATACCAGTGC
  AGAAAGAAAG AGAAAGAAGT GAGGCCCATA TAAGTGAATA ATAAGTTTTC TTTAGTTAAG
  GACAGTCCCT GTAGAAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss24753726	Tmprss5_JC8262_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs16799454					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49015888 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	1757 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	1836 bp downstream