rs16799455 SNP Detail

Summary

• ID
  rs16799455
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49015896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTCCA TTACATCCAG
  CTAGAATCTA GTTTTGAGAT GCTATATTTA TTCTATTGGA TTACAAATTC ATTGAGGAAG
  TATTTACAGC CTATATGCAT TTCTTATTGA TATTATTATA ATTAACATGT AGCTTGTGTT
  TTATCCATAA AGCCCTTATT TTCCTCTATT CCTTCTTGTC TTCACCCCTC CTCCCTCCCT
  M
  CCTCCTTCCT ATTCCCCTCC CTGTCCCTCT CTTCCTTTCT TCTTTCTCCT TCCTTACTTC
  CATGCCTTTT TGTGCCAGTC CTTGGTATGT GTATATATAT ATATACCAGT GCAGAAAGAA
  AGAGAAAGAA GTGAGGCCCA TATAAGTGAA TAATAAGTTT TCTTTAGTTA AGGACAGTCC
  CTGTAGAAAT GACTGAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss24753727	Tmprss5_JC8262_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs16799455					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49015896 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	1765 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	1844 bp downstream