rs16799622 SNP Detail

Summary

• ID
  rs16799622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675774 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

               GGACCCCC GTTAAGCCAA AGCACCACGG GGCTGTTCTT TGGGTCNTTC
  TGCGACTCCA CAAACCTGGG AAGGATAGGA AAGGATTGGT GTGAGTCCAG GTCCTGCCTG
  GGGTCGTTAG AATTCGCNCG TCCAGTTATC ATGCCCTCCT AGGAACTTTA GGGCCAAGCC
  AAGCACCAGT AGTGGAAGTG CTTGGAGTCC GATGCTCTGA GGTAGCCGGA GTATTGCCGG
  AAAGAGGGCT GCTTGGCCAG GCCGGGGGGA CCCCCGTTAA GCCAAAGCAC CACGGGGCTG
  TTCTTTGGGT CNTTCTGCGA CTCCACAAAC CTGGGAAGGA TAGGAAAGGA TTGGTGTGAG
  TCCAGGTCCT GCCTGGGGTC GTTAGAATTC GCNCGTCCAG TTATCATGCC CTCCTAGGAA
  CTTTAGGGCC AAGCCAAGCA CCAGTAGTGG AAGTGCTTGG AGTCCGATGC TCTGAGGTAG
  CCGGAGTATT GCCGGAAAGA GGGCTGCTTG GCCAGGCCGG GGACCAGTTT GGGCCTCTCC
  S
  TACCTCTGCT TCCTTGCNCC CTTGCTCTCC CGGAGNCCCC TTTNGACNGG NANTCATGT 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	LP/J	NZW/Lac
ss24753907	Ppgb_JC7731_5	ROCHEBIO	RPAMM	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	LP/J	NZW/Lac
rs16799622					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675774 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	398 bp upstream
Rr367364	regulatory region 367364	within coordinates
Tssr21656	transcription start site region 21656	976 bp downstream
Tssr21657	transcription start site region 21657	919 bp downstream
Tssr21658	transcription start site region 21658	884 bp downstream
Tssr21659	transcription start site region 21659	79 bp downstream
Tssr21660	transcription start site region 21660	42 bp downstream
Tssr21661	transcription start site region 21661	2 bp downstream
Tssr21662	transcription start site region 21662	161 bp upstream
Tssr21663	transcription start site region 21663	222 bp upstream
Tssr21664	transcription start site region 21664	253 bp upstream
Tssr21665	transcription start site region 21665	1009 bp upstream
Tssr21666	transcription start site region 21666	1320 bp upstream
Tssr21667	transcription start site region 21667	1373 bp upstream
Tssr21668	transcription start site region 21668	1775 bp upstream
Tssr21669	transcription start site region 21669	1827 bp upstream
Tssr27546	transcription start site region 27546	374 bp upstream