rs16799733 SNP Detail

Summary

• ID
  rs16799733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTCCAA GAGGACTTTC
  TAGAGATGAT GGTGAAGAAC GGCACCCTAC AGCCAACGGG GTGACAGGGT GACAATTTAG
  TTTTAACTCA GTTGTACAGG GACAGTGAAA CAGAAACCTC CCCGCTGAGA GAAAGAATTC
  CTCTCTGCAA GGGGAAAGGA GAAAAGCCAG AGGGGTGATA GCCTTCATTC CAGGAATGCT
  R
  TACCCCCGAC AAGGTGTCTG TCCCGTACTG AGAAACATCT GTATCCCCCA GAGAAGGCCA
  GATCCCTGAG ACTGCCCCTT CCAGGCAAAG TGGCTTTTTA CACTCTTTCT GGTCTTTGCC
  TCCCACCAGT TTAGAGCTCC CCTGGGGTGC TAGGGCTGGG ATCTCACGGA GGAATTTGTC
  TCTTTTAAAC ACAGAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24754048	Fcamr_JC9044_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16799733					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730548 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	349 bp distal
Rr30372	regulatory region 30372	54 bp proximal
Tssr8571	transcription start site region 8571	271 bp upstream