rs16799734 SNP Detail

Summary

• ID
  rs16799734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTGAA GAACGGCACC
  CTACAGCCAA CGGGGTGACA GGGTGACAAT TTAGTTTTAA CTCAGTTGTA CAGGGACAGT
  GAAACAGAAA CCTCCCCGCT GAGAGAAAGA ATTCCTCTCT GCAAGGGGAA AGGAGAAAAG
  CCAGAGGGGT GATAGCCTTC ATTCCAGGAA TGCTGTACCC CCGACAAGGT GTCTGTCCCG
  W
  ACTGAGAAAC ATCTGTATCC CCCAGAGAAG GCCAGATCCC TGAGACTGCC CCTTCCAGGC
  AAAGTGGCTT TTTACACTCT TTCTGGTCTT TGCCTCCCAC CAGTTTAGAG CTCCCCTGGG
  GTGCTAGGGC TGGGATCTCA CGGAGGAATT TGTCTCTTTT AAACACAGAA ATCTCATGAG
  TAAGGCAAAC TCATGAGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754049	Fcamr_JC9044_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799734					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730574 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	Intron
Tssr8571	transcription start site region 8571	245 bp upstream