rs16799734 SNP Detail

Summary

• ID
  rs16799734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTGAA GAACGGCACC
  CTACAGCCAA CGGGGTGACA GGGTGACAAT TTAGTTTTAA CTCAGTTGTA CAGGGACAGT
  GAAACAGAAA CCTCCCCGCT GAGAGAAAGA ATTCCTCTCT GCAAGGGGAA AGGAGAAAAG
  CCAGAGGGGT GATAGCCTTC ATTCCAGGAA TGCTGTACCC CCGACAAGGT GTCTGTCCCG
  W
  ACTGAGAAAC ATCTGTATCC CCCAGAGAAG GCCAGATCCC TGAGACTGCC CCTTCCAGGC
  AAAGTGGCTT TTTACACTCT TTCTGGTCTT TGCCTCCCAC CAGTTTAGAG CTCCCCTGGG
  GTGCTAGGGC TGGGATCTCA CGGAGGAATT TGTCTCTTTT AAACACAGAA ATCTCATGAG
  TAAGGCAAAC TCATGAGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754049	Fcamr_JC9044_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799734					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730574 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	375 bp distal
Rr30372	regulatory region 30372	28 bp proximal
Tssr8571	transcription start site region 8571	245 bp upstream