rs16799736 SNP Detail

Summary

• ID
  rs16799736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

         GAA TTCCTCTCTG CAAGGGGGAA NGGAGAAAAG CCAGAGGGGT GANAGCCTTC
  ATTCCAGGAA TGCTNTACCC CCGACAAGGT GTCTGTCCCG NACTGAGAAA CATCTGTATN
  Y
  CCNCAGAGAA GGCCAGATCC CTGAGACTGC NCCTTCCAGG CAAAGTGGCT TTTTACACTC
  TTTCTGGTCT TTGCCTCCNA CCAGTTTAGA GCTCCCCTGG GGTGCTAGGN CTGGNATCTC
  ACNGAGGAAT TTGTCTCTTT TAAACACAGA AATCTCATGA GTAAGGCAAA CTCATGAGCA
  ANTCTTCCTG GCAGCANCTC ACTTGCCAGG ACANGCAGTT CCCTGGCCCT GCCTTTCGGG
  TAGAGCTACC CAGCTACTGG AGCAAACTGA GANTGCACAG CCAGAGTGCN GAGCCCTGGA
  CTCCCGACCA CTCTCTCCAG CTTCTCACAA GCCTCCCTCT GGCCTCTTGT CTTTGGCTGC
  AGGTCCCCAG CCTGAGAACG AGATGGGAAA TACTTCTNCT NNNACTCTGT CTGCTCCATG
  GTGAGTCCAT ANACAGCCAG GCTTCAGAGA CTGTGGGAGA GCTGGCAGTG GAACTCAGAA
  CCA                                                              
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754051	Fcamr_JC9044_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799736					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730593 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	394 bp distal
Rr30372	regulatory region 30372	9 bp proximal
Tssr8571	transcription start site region 8571	226 bp upstream