rs16799738 SNP Detail

Summary

• ID
  rs16799738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTTTAA CTCAGTTGTA
  CAGGGACAGT GAAACAGAAA CCTCCCCGCT GAGAGAAAGA ATTCCTCTCT GCAAGGGGAA
  AGGAGAAAAG CCAGAGGGGT GATAGCCTTC ATTCCAGGAA TGCTGTACCC CCGACAAGGT
  GTCTGTCCCG TACTGAGAAA CATCTGTATC CCCCAGAGAA GGCCAGATCC CTGAGACTGC
  Y
  CCTTCCAGGC AAAGTGGCTT TTTACACTCT TTCTGGTCTT TGCCTCCCAC CAGTTTAGAG
  CTCCCCTGGG GTGCTAGGGC TGGGATCTCA CGGAGGAATT TGTCTCTTTT AAACACAGAA
  ATCTCATGAG TAAGGCAAAC TCATGAGCAA ATCTTCCTGG CAGCACCTCA CTTGCCAGGA
  CACGCAGTTC CCTGGCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754053	Fcamr_JC9044_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799738					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730624 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Tssr8571	transcription start site region 8571	195 bp upstream