rs16799740 SNP Detail

Summary

• ID
  rs16799740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAAAA GCCAGAGGGG
  TGATAGCCTT CATTCCAGGA ATGCTGTACC CCCGACAAGG TGTCTGTCCC GTACTGAGAA
  ACATCTGTAT CCCCCAGAGA AGGCCAGATC CCTGAGACTG CCCCTTCCAG GCAAAGTGGC
  TTTTTACACT CTTTCTGGTC TTTGCCTCCC ACCAGTTTAG AGCTCCCCTG GGGTGCTAGG
  R
  CTGGGATCTC ACGGAGGAAT TTGTCTCTTT TAAACACAGA AATCTCATGA GTAAGGCAAA
  CTCATGAGCA AATCTTCCTG GCAGCACCTC ACTTGCCAGG ACACGCAGTT CCCTGGCCCT
  GCCTTTCGGG TAGAGCTACC CAGCTACTGG AGCAAACTGA GAATGCACAG CCAGAGTGCC
  GAGCCCTGGA CTCCCGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754055	Fcamr_JC9044_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799740					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730703 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	504 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	116 bp upstream