rs16799743 SNP Detail

Summary

• ID
  rs16799743
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGAAAC ATCTGTATCC
  CCCAGAGAAG GCCAGATCCC TGAGACTGCC CCTTCCAGGC AAAGTGGCTT TTTACACTCT
  TTCTGGTCTT TGCCTCCCAC CAGTTTAGAG CTCCCCTGGG GTGCTAGGGC TGGGATCTCA
  CGGAGGAATT TGTCTCTTTT AAACACAGAA ATCTCATGAG TAAGGCAAAC TCATGAGCAA
  M
  TCTTCCTGGC AGCACCTCAC TTGCCAGGAC ACGCAGTTCC CTGGCCCTGC CTTTCGGGTA
  GAGCTACCCA GCTACTGGAG CAAACTGAGA ATGCACAGCC AGAGTGCCGA GCCCTGGACT
  CCCGACCACT CTCTCCAGCT TCTCACAAGC CTCCCTCTGG CCTCTTGTCT TTGGCTGCAG
  GTCCCCAGCC TGAGAACGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754058	Fcamr_JC9044_12	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799743					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730775 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	576 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	44 bp upstream