rs16799744 SNP Detail

Summary

• ID
  rs16799744
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCCCAG AGAAGGCCAG
  ATCCCTGAGA CTGCCCCTTC CAGGCAAAGT GGCTTTTTAC ACTCTTTCTG GTCTTTGCCT
  CCCACCAGTT TAGAGCTCCC CTGGGGTGCT AGGGCTGGGA TCTCACGGAG GAATTTGTCT
  CTTTTAAACA CAGAAATCTC ATGAGTAAGG CAAACTCATG AGCAAATCTT CCTGGCAGCA
  S
  CTCACTTGCC AGGACACGCA GTTCCCTGGC CCTGCCTTTC GGGTAGAGCT ACCCAGCTAC
  TGGAGCAAAC TGAGAATGCA CAGCCAGAGT GCCGAGCCCT GGACTCCCGA CCACTCTCTC
  CAGCTTCTCA CAAGCCTCCC TCTGGCCTCT TGTCTTTGGC TGCAGGTCCC CAGCCTGAGA
  ACGAGATGGG AAATACTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24754059	Fcamr_JC9044_13	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16799744					SNP	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730790 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	591 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	29 bp upstream