rs16799748 SNP Detail

Summary

• ID
  rs16799748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                 G AATTCCTCTC TGCAAGGGGG AANGGAGAAA
  AGCCAGAGGG GTGANAGCCT TCATTCCAGG AATGCTNTAC CCCCGACAAG GTGTCTGTCC
  CGNACTGAGA AACATCTGTA TNNCCNCAGA GAAGGCCAGA TCCCTGAGAC TGCNCCTTCC
  AGGCAAAGTG GCTTTTTACA CTCTTTCTGG TCTTTGCCTC CNACCAGTTT AGAGCTCCCC
  TGGGGTGCTA GGNCTGGNAT CTCACNGAGG AATTTGTCTC TTTTGAATTC CTCTCTGCAA
  GGGGGAANGG AGAAAAGCCA GAGGGGTGAN AGCCTTCATT CCAGGAATGC TNTACCCCCG
  ACAAGGTGTC TGTCCCGNAC TGAGAAACAT CTGTATNNCC NCAGAGAAGG CCAGATCCCT
  GAGACTGCNC CTTCCAGGCA AAGTGGCTTT TTACACTCTT TCTGGTCTTT GCCTCCNACC
  AGTTTAGAGC TCCCCTGGGG TGCTAGGNCT GGNATCTCAC NGAGGAATTT GTCTCTTTTT
  Y
  CTNNNACTCT GTCTGCTCCA TGGTGAGTCC ATANACAGCC AGGCTTCAGA GACTGTGGGA
  GAGCTGGCAG TGGAACTCAG AACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754063	Fcamr_JC9044_17	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799748					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730991 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	792 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	163 bp downstream