rs16800898 SNP Detail

Summary

• ID
  rs16800898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130728846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAAAGAA AGGGTCCAAG
  TTGATCTTGC TCAGGACTAA CATGGACCAA GGTGCCCCAG CTAAGCCCAG TGAACAAAAG
  GTAACGTGGC TTTCTCCTGG AGGTCTGGGT CTTGCTCCCA GCAAGGGTAG TACGTTGCAG
  CAGCAACTGT AACTTGTGCA CCAGGGTTCT CCTCTGAGCA GGGAGGCTCC TGACAAAGGC
  Y
  GCGAAGACTC AGGAGTTCAA GCCCCAGCCT TCCTTTTCTG TACTCTCTTC TCCACTGCAG
  CCAAGTATTC TGAGTCTGAA ACCTGGGTAA GACAGAGCCA GCAGCACACA TTAGATACAG
  AACACATAGC CACTCAGGAG AGGCTCTTAT TTTGAAGTGG AGGGCAATAA GCATCAGGGT
  CAACTTAGCA GTCTCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
ss24755484	Fcamr_JC9042_8	ROCHEBIO	RPAMM	f	SNP	C		C			C				C	C			C	C		C		C		C		C	T
ss49673276	NES12995483	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C	T	C		C	C			T		C		C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
rs16800898					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673276	NES12995483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130728846 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1756 bp proximal
Tssr8570	transcription start site region 8570	469 bp downstream
Tssr8571	transcription start site region 8571	1973 bp upstream