rs16800899 SNP Detail

Summary

• ID
  rs16800899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130728874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGGACT AACATGGACC
  AAGGTGCCCC AGCTAAGCCC AGTGAACAAA AGGTAACGTG GCTTTCTCCT GGAGGTCTGG
  GTCTTGCTCC CAGCAAGGGT AGTACGTTGC AGCAGCAACT GTAACTTGTG CACCAGGGTT
  CTCCTCTGAG CAGGGAGGCT CCTGACAAAG GCCGCGAAGA CTCAGGAGTT CAAGCCCCAG
  Y
  CTTCCTTTTC TGTACTCTCT TCTCCACTGC AGCCAAGTAT TCTGAGTCTG AAACCTGGGT
  AAGACAGAGC CAGCAGCACA CATTAGATAC AGAACACATA GCCACTCAGG AGAGGCTCTT
  ATTTTGAAGT GGAGGGCAAT AAGCATCAGG GTCAACTTAG CAGTCTCCAG CAATGCCAAA
  CCTGGTGATG CTCTGCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24755485	Fcamr_JC9042_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16800899					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130728874 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1728 bp proximal
Tssr8570	transcription start site region 8570	497 bp downstream
Tssr8571	transcription start site region 8571	1945 bp upstream